A Database of Drosophila Genes & Genomes

BLAST Service

BLAST Database
Program
MegaBLAST (blastn only)
Expect
  • A = Genome assembly: largest unit (NT)
  • G = Annotated genes (NT)
  • P = Annotated proteins (AA)
  • U = Degenerate scaffolds (NT)
  • GR = GLEANR predictions (NT/AA)
  • I = Intergenic sequences (NT)
  • B = Syntenic blocks (NT)
  • T = Transposons- all annotated elements (NT)
  • C = Transposons- canonical set (NT)
  • D = GenBank sequences (NT)
  • D = GenBank EST sequences (NT)
  • D = UniProt sequences (AA)
Enter sequence

Or load it from disk

Select species to search against

Clicking a node in the tree below selects all species under that node.
More information about the CAF1 assemblies can be obtained from the AAA site.

  • species tree
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot
  • red dotblack dot

Species

  • Drosophila melanogaster [A,G,P,I,T,D,U,C] - r5.2
  • Drosophila simulans [A,D,GR,C] - CAF1
  • Drosophila sechellia [A,D,GR] - CAF1
  • Drosophila yakuba [A,D,GR,C] - CAF1
  • Drosophila erecta [A,D,GR] - CAF1
  • Drosophila ananassae [A,D,GR,C] - CAF1
  • Drosophila pseudoobscura [A,G,P,I,B,T,D,GR,C] - r2.0
  • Drosophila persimilis [A,D,GR] - CAF1
  • Drosophila willistoni [A,D,GR,C] - CAF1
  • Drosophila mojavensis [A,D,GR] - CAF1
  • Drosophila virilis [A,D,GR,C] - CAF1
  • Drosophila grimshawi [A,D,GR] - CAF1
  • Culex pipiens (mosquito) [A,D]
  • Aedes aegypti (mosquito) [A,D,]
  • Anopheles gambiae (mosquito) [A,D]
  • Bombyx mori (silkworm)1 [A,D]
  • Bombyx mori (silkworm)2 [A,D]
  • Tribolium castaneum (red flour beetle) [A,D]
  • Apis mellifera (honey bee) [A,D]
  • Nasonia vitripennis (wasp) [A,D]
  • P. humanus corporis (human body louse) [A,D]
  • 1. Kasahara, M, et. al. DNA Res. 2004 Feb 29;11(1):27-35 PMID: 15141943
  • 2. Xia, Q, et. al. Science. 2004 Dec 10;306(5703):1937-40 PMID: 15591204

Advanced BLAST options

Output Format
Number of
Descriptions Alignments
Low Complexity Filter
Word Size
Matrix
Genetic Codes
Other options
(e.g. -G 7 -E 3)